FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489968
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12890.26307840512033437No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12590.2569555562812265No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12580.25675146131992294No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9050.1847059399797538No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7290.148785226790321No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7230.14756065702249943No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6900.14082552329948078No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6770.13817228880253404No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6730.13735590895731967No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6720.13715181399601606No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6580.13429448453776574No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6540.13347810469255136No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6290.12837573065996147No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6130.12511021127910393No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6070.12388564151128237No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6020.1228651667047644No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5770.1177627926721745No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5410.11041537406524507No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5280.10776213956829833No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4960.10123110080658329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)