FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479650
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT18300.3815281976441155No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA10180.21223809027415824No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA7300.1521943083498384No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6880.1434379234858751No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5530.11529240070885019No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG4810.10028145522777024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)