FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479650
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG18840.3927864067549255No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA10300.2147399145210049No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9010.1878453038674033No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA7360.15344522047326176No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6760.14093609923902847No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5720.11925362243302406No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5640.11758573960179299No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5020.1046596476597519No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4940.10299176482852081No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC4890.10194933805900135No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4840.10090691128948191No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4800.10007296987386637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)