FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517171
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10980.212308888162716No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT9120.17634399453952368No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8140.1573947495122503No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6680.12916424161447568No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6330.12239665410473519No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6330.12239665410473519No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6020.11640250516753647No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5820.11253531230482762No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)