FastQCFastQC Report
Sun 21 May 2023
EGAF00007938200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517171
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47720.9227122170423322No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13140.2540745710799716No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11060.21385576530779954No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11010.21288896709212232No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10660.20612137958238183No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9330.18040454704536796No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7430.14366621484963388No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6210.12007633838710986No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5620.10866811944211877No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5570.10770132122644153No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5560.1075079615833061No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5180.10016029514415929No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)