FastQCFastQC Report
Wed 31 May 2023
EGAF00007938202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503559
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20500.40710224621146673No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15910.3159510603524115No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12150.24128255080338154No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10850.21546631079972756No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8510.16899707879315035No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8120.16125220679205415No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7830.15549319940662365No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7310.14516670340516205No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6680.1326557563264682No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6210.12332219263283944No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5770.11458438832391042No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5720.11359145601607756No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5620.11160559140041186No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5500.10922255386161304No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5230.10386071939931568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)