FastQCFastQC Report
Sun 21 May 2023
EGAF00007938203

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938203
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506463
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG13460.2657647251625489No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13240.2614208737854493No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12730.2513510365021729No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12290.2426633337479737No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11470.2264726149787842No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9380.18520602689633794No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8440.1666459346487305No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC8130.1605250531628174No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7710.15223224598835453No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT7250.14314964765441898No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG6770.13367215374074712No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG6620.13071043689272466No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA6240.1232074208777344No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5910.116691643812085No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5880.11609930044248051No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5550.10958352337683108No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5380.10622691094907229No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5370.10602946315920413No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT5330.10523967199973147No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)