FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506463
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45870.9056930121252688No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16540.32657864444194346No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13150.2596438436766358No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12810.2529306188211182No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12760.2519433798717774No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11520.22745985392812504No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9870.194880968599878No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9350.18461368352673344No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8930.17632087635227056No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG8860.17493874182319338No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT7630.15065266366940921No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT7350.1451241255531006No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6960.13742366174824222No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC6870.13564663163942875No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6610.1305129891028565No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6190.12222018192839358No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6050.1194559128702393No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5820.11491461370327152No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5760.11372992696406252No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5720.11294013580458986No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5360.10583201536933597No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5340.10543711978959963No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5220.10306774631118167No Hit

[OK]Adapter Content

Adapter graph