FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500755
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15880.31712114706792743No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15410.3077353196673024No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14390.2873660772233927No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14030.28017693283142453No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG13020.2600073888428473No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11700.23364719273896417No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10350.20668790126908368No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10010.19989815378778047No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9340.18651835728050642No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7090.14158620483070564No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6490.12960429751075878No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6480.1294045990554263No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG6150.12281455002945553No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6010.12001877165480125No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5970.11921997783347145No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5490.10963445197751395No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5450.10883565815618416No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5390.10763746742418948No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5320.10623957823686232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)