FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469547
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9610.20466534766487698No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8860.18869250575554736No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8500.18102554163906914No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7270.15483008090776856No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6390.13608861306748846No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6340.1350237569401998No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6100.12991244752921433No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6050.1288475914019257No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6010.12799570650009479No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5230.11138395091439196No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4990.10627264150340648No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4950.10542075660157557No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4880.10392995802337146No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4750.101161332092421No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)