FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938210

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938210
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469547
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42680.9089611902535849No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17570.37419044312922883No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12670.2698345426549419No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10980.23384240555258579No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9020.19210004536287104No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8980.19124816046104012No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7740.1648397285042818No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6850.14588528943854398No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6800.14482043331125533No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6700.14269072105667804No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6400.1363015842929462No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5610.11947685748178564No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5430.11564337542354652No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5200.11074503723801878No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5080.10818938253252604No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4940.10520778537611783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)