FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938214

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938214
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525796
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41860.7961262542887355No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17930.3410067782942434No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12220.23240952764950665No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12190.23183896416100544No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10980.20882623679145526No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10430.19836590616893243No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9660.1837214432974005No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8030.15272082708883292No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7250.1378861763878006No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7140.13579411026329605No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7000.13313148065029023No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5870.11164025591674338No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5670.10783649932673509No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5350.10175048878272182No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)