FastQCFastQC Report
Sun 21 May 2023
EGAF00007938216

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938216
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477164
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44260.9275636887946282No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30330.6356305169711043No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24580.5151268746175319No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24330.5098875858195505No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21660.4539319814571091No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15460.3239976192671702No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14200.2975916037253439No Hit
ATGTCCAACATGGACATCGATGGTATTAACA14070.2948671735503936No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13120.2749578761180642No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12840.26908987266432505No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12370.25924000972412004No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11190.23451056659764777No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10290.21564912692491472No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9190.1925962562137965No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9140.19154839845420024No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8640.18106982085823742No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7060.14795751565499493No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6630.1389459389224669No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6620.13873636737054765No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6510.13643108029943585No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6430.13475450788408178No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6330.1326587923648892No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6300.13203007770913144No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6060.12700036046306928No Hit
AACGGTAACCGTTGCGAATGGTTTTTCAAGT5700.11945578459397607No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5640.11819835528246053No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5580.116940925970945No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5530.11589306821134873No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA5390.11295906648447913No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5340.11191120872488285No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG5240.10981549320569028No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5220.10939635010185178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)