FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938218

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938218
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503542
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT69571.3816126559452837No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24940.49529135603385616No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19160.3805045060789368No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16430.3262885717576687No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13050.2591640816456224No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12260.2434752215306767No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11340.22520465025757533No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11250.22341731176346757No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11090.22023982110727608No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10340.20534533365637822No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10240.20335940199625852No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9940.19740160701589934No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9770.19402552319369587No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9530.18925928720940854No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9430.18727335554928884No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9390.18647898288524095No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8320.16522951412196002No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7230.14358285902665516No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7070.14040536837046363No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6850.13603631871820027No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6810.13524194605415238No Hit
GTAGGTCCAACCCCTCACCAGACCCCGCAGG6780.13464616655611647No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6750.13405038705808056No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6560.1302771169038531No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6470.12848977840974535No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6320.1255108809195658No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6230.12372354242545806No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5240.10406281899027289No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)