FastQCFastQC Report
Sun 21 May 2023
EGAF00007938227

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938227
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532386
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17630.33115070644231814No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13640.25620508428095407No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11200.21037367624242562No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10520.19760098875627832No Hit
AACGCTACGGATGTTCGCCACGCACAGGGTGTTGTTGGTAGACG7110.13354971768603982No Hit
ACCGGCCATGCCACGTTCGCCCGGCAGGCCAGGGTTACCATCCT6840.12847820941948135No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)