FastQCFastQC Report
Wed 31 May 2023
EGAF00007938228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532386
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50130.9416100348243568No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28920.5432148854402632No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17050.3202563553511925No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10560.198352323314287No Hit
CCGCCGGGTCTGAAGGGTGCAAAAGGTGAAC7410.1391847268711048No Hit
GAAGTCTCCATTGCCGAACCGACCACTTACA7360.13824555867359398No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5500.10330850172619115No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)