FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463056
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT14960.32307107563664006No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12250.2645468366677033No Hit
CTGCACAGAGTCTTTGATAACAATCTGATCGAAACGTGGTACGT10070.21746829757092018No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9960.21509277495594484No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT8990.19414498462388996No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8810.19025776579938497No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7950.17168549808230538No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7750.16736636605507757No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7480.16153553781832003No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGGAAG7270.15700044918973083No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7020.15160153415569608No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6790.1466345323243841No Hit
TCATTTGAAACGCTGCATCTGGACGCCCATACGTTTCTGGTAGG6730.14533879271621575No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6620.14296327010124044No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6610.14274731349987907No Hit
CTGCATCTGCACACCCATACGTTTCTGGTAGGCTTGCAGGTTCT6480.139939877682181No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6260.1351888324522304No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6170.1332452230399779No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5860.1265505683977748No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG5780.12482291558688365No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5760.12439100238416088No Hit
CATACGGTCCAGGTCTTCGGTCGCGGAGCGAGCACGGGTGCTGG5720.12352717597871532No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5680.12266334957326974No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5650.12201547976918559No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5580.12050378355965585No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5140.11100169309975468No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4770.10301129884938323No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4740.10236342904529905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)