FastQCFastQC Report
Wed 31 May 2023
EGAF00007938234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463056
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16080.3472582149891158No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15110.3263104246570609No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15080.32566255485297674No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13230.2857105836011195No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12160.26260322725545077No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11760.25396496320099515No Hit
GCTATCAACACCGTCACCACCAACGCCAATA10060.21725234096955878No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9960.21509277495594484No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA9020.19479285442797414No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8880.19176946200891468No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8060.1740610206972807No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7720.16671849625099341No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGA7640.16499084344010229No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7300.157648318993815No Hit
AGCGAACAGGCAGCGGAAGCGATGGAAGTTG7090.1531132303652258No Hit
GCAGAAGCGATGGAAGTGGCGAACAAAACCC6800.14685048892574548No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6350.1371324418644829No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6190.13367713624270067No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6150.1328133098372551No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6040.1304377872222798No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5940.12827822120866592No Hit
ATGTCTTCTCGCCGCCGTAGCTCTTCCCGTC5870.12676652499913615No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5870.12676652499913615No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC5640.12179952316782418No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5630.1215835665664628No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5550.1198559137555717No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5330.11510486852562109No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5300.11445699872153692No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5260.11359317231609135No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4780.10322725545074461No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4740.10236342904529905No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4690.1012836460384921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)