FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467203
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT71991.5408719550174121No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44110.9441292114990699No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15560.3330458066407964No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15420.33004925053991524No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14660.3137822317065601No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14290.3058627620113741No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12110.2592021027262239No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11890.25449322885341064No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11470.245503560550767No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10550.22581190617354768No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10020.2144678009344974No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9630.20612025179632837No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9440.20205349708798961No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9110.1949901862787696No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8810.18856899463402418No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8290.17743892911646544No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7900.16909137997829637No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7190.15389455975239885No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6760.14469085172826374No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6520.13955389841246738No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5720.12243072069314624No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5620.1202903234782311No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5250.11237085378304505No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5200.11130065517558749No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4880.10445138408785902No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4850.10380926492338449No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4840.10359522520189297No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4780.10231098687294388No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)