FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506022
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15180.2999869570888222No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14670.2899083439059962No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12610.24919865144203218No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10420.20591990071577915No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9650.19070317100837514No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6150.12153621779290229No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6030.11916477939694321No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)