FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506022
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32400.6402883669089486No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12860.2541391481002802No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12780.25255818916964085No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9530.18833173261241606No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9350.18477457501847747No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6760.13359102963902755No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6360.12568623498583065No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5180.10236709075889981No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)