FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500778
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21650.4323272987231867No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13960.2787662397309786No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13700.27357431836063084No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT13230.26418892203731No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13180.2631904756199354No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT12080.24122465443769497No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11930.23822931518557128No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11590.2314398795474242No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA11350.2266473367440263No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11280.22524951175970193No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10750.2146659797355315No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG10570.2110715726329831No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10140.2024849334435618No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9220.18411351936386983No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC9140.18251600509607052No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG8760.17492781232402382No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG8110.16194800889815447No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8040.16055018391383008No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7980.1593520482129806No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7980.1593520482129806No Hit
GGTAGTGTTGTCGCCGGTGATACCGGACGTAGAGCTGCTGCCGA7660.15296199114178338No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7640.15256261257483356No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT7470.14916789475576003No Hit
CAGGAAACCACGTTCTGCGGACATCTGCAGGCTACGCAGTGCCG7140.1425781484010879No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7000.13978249843243912No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT6980.1393831198654893No Hit
TGGTTCAACACGGGACACCATGTCGCAGTTATCCGGGGTCAGCA6860.13698684846379033No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6850.13678715918031542No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6420.12820051999089419No Hit
GCTGTCGGTTTCCAGGATAGTCAGCAGCGGCTCGCGAATTTTCG6230.12440642360487082No Hit
GTAGCCAGAACCATCGGAACCGGTAACCGGAGCTGCTTTGGAGC6080.12141108435274713No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5890.11761698796672379No Hit
CGCAACACCTACGCTCTGCAGCAGTTGAGCATGTGCAGACTGGG5860.11701792011629905No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5810.11601947369892449No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5600.1118259987459513No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5520.11022848447815199No Hit
ATCCTTCAGCTCCAGAACTTCCAGCTGCGCATTTTTCAGACGGT5470.10923003806077743No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5390.10763252379297814No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG5220.1042378059739046No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5160.10303967027305513No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT5060.101042777438306No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5040.10064339887135618No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)