FastQCFastQC Report
Wed 31 May 2023
EGAF00007938245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476927
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23590.4946249635688481No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20500.42983517393647247No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19810.4153675510088546No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT18660.3912548461294916No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT16480.34554554470600324No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10780.22603039878220355No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9360.19625645014855522No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG8850.1855629897237942No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7460.15641806817395534No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6960.1459342834437975No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA6540.13712790427046487No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6170.12936990357014805No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6150.12895055218094173No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5870.12307963273205333No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5640.11825709175618071No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5370.11259584800189547No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5320.11154746952887967No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5120.10735395563681654No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5030.10546687438538813No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5000.10483784730157865No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4950.10378946882856287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)