FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469570
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG30370.6467619311284792No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC25800.5494388483080265No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24910.5304853376493388No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24710.5262261217709819No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24620.5243094746257214No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA23180.4936431203015525No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18630.3967459590689354No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA18440.3926997039844965No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18260.38886640969397535No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15770.3358391720084333No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14680.31262644547138874No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12860.2738675809783419No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11340.24149754030283024No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG11200.2385160891879805No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10820.2304235790191026No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9850.20976638200907216No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9760.20784973486381156No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG9160.1950720872287412No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9130.19443320484698767No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8010.1705815959281896No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7570.16121132099580468No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7270.15482249717826949No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7090.15098920288774836No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG6420.13672082969525312No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6410.13650786890133526No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6330.13480418254999255No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6320.1345912217560747No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGTAGC6230.13267457461081414No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6130.13054496667163573No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6110.13011904508380007No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5880.12522094682368975No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5860.12479502523585408No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5730.12202653491492216No Hit
AACGCTACGGATGTTCGCCACGCACAGGGTGTTGTTGGTAGACG5560.1184062014183189No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTACCG5420.11542475030346913No Hit
GTAAGACAGCACCTGGCCCGGATAGATCAGGTTGGCGTTGGAGA5360.1141469855399621No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5200.11073961283727665No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4910.1045637498136593No Hit
CGGATACAGTGCCGGGGCGTTATCACCGACCAGACCCAGGAAGC4900.10435078901974146No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT4700.10009157314138468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)