FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480351
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT75401.5696855008108654No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC34930.7271765854552192No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34650.7213475146299269No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18420.38346958786387453No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15690.32663614731727425No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14520.30227895851158837No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13010.27084361227519044No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT12910.26876180126615745No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12370.2575200218173794No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12360.25731184071647606No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12080.25148276989118373No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC11800.24565369906589138No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10180.21192836071955717No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10160.21151199851775054No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8520.17737029796960974No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8260.17195758934612398No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG8160.169875778337091No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7840.16321398310818547No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7100.14780858164134145No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA6340.13198681797269082No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5380.11200143228597421No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG5240.10908689687332805No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC5170.10762962916700497No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5170.10762962916700497No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5010.10429873155255219No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4870.10138419613990603No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACC4830.10055147173629282No Hit
ACCCAGGGTGAAGTTAACGTAACTGGCGTTA4820.10034329063538955No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)