FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463461
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44270.9552044292831543No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11910.25697955167748743No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10920.23561853100908164No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6130.13226571383568414No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5360.1156515866491463No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5300.1143569793359096No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4820.1040001208300159No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)