FastQCFastQC Report
Wed 31 May 2023
EGAF00007938253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441769
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT8210.18584373281058653No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6790.15370023700169091No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5840.1321957855802467No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5730.12970579646828997No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5650.12789489529595785No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5460.12359400501166899No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG5100.11544494973617432No Hit
ATCGCCAATAGTGATGAAGGTACGGGAGTCCAGGTTACGTGGCG4710.10661680652105512No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT4690.10616408122797209No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)