FastQCFastQC Report
Wed 31 May 2023
EGAF00007938254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441769
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44641.0104828541613378No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15540.35176755272551946No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7250.16411291874260078No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6040.13672303851107706No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5960.1349121373387449No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5760.13038488440791454No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5520.12495218089091811No Hit
ATGGAAAGCCCGGCTTCTAGCCAGCCTGCGT4550.10299500417639082No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4490.10163682829714173No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4440.10050501506443414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)