FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530452
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23760.44791988719054693No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG19630.3700617586511126No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13430.2531803066064413No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12870.2426232722282129No Hit
TTCGTAAGACGGCAGTGCGGACGGGGACTGACGATCGTCGGTGG12530.23621364421285998No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11650.21962401876135826No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11210.21132920603560734No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10520.19832143153386167No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7270.13705292844592912No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6140.11575034121843258No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6030.11367663803699486No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5590.105381825311244No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5580.1051933068402042No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)