FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938256

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938256
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530452
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28800.5429331965946024No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24370.4594195139239743No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24180.45583766297421824No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT19390.36553731534615763No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13440.2533688250774811No Hit
CTGCCGGTTACCGTCACCATCGCCCCGATGT12360.2330088302051835No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10850.20454254107817485No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10790.2034114302519361No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9710.1830514353796385No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6230.11744700745779071No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG6160.11612737816051218No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6090.11480774886323361No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5780.10896367626100005No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)