FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938260

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938260
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451606
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38550.8536201910514917No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA27890.6175737257698082No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19830.4390995690934133No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG19630.43467092996992956No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG16670.36912707094237013No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16180.35827690508983495No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA15190.3363551414285904No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG14720.3259478394884036No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC13660.30247605213393974No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13550.30004030061602366No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC9480.2099174944531295No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9410.2083674707599102No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG8440.18688857101101403No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7990.1769241329831756No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7610.1685097186485565No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6430.14238074782000237No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC6240.13817354065269283No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6060.13418776544155747No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5930.131309150011293No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG5770.12776623871250603No Hit
ACCCAGGTTTACCAGGACCCAGCAATCGTAC4860.10761593070065499No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4610.10208013179630032No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA4610.10208013179630032No Hit

[OK]Adapter Content

Adapter graph