FastQCFastQC Report
Wed 31 May 2023
EGAF00007938261

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938261
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470947
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22860.48540493940931784No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19400.4119359503298673No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14190.30130779047323797No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14000.29727336621742995No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC12710.26988174890168104No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT12070.25629210930317003No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG10820.22974984446232802No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10560.2242290533754329No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG10500.2229550246630725No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG10460.22210567218816554No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9920.2106394137769218No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT8260.1753912860682837No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC8120.17241855240610937No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8080.17156919993120245No Hit
AACATCGTGACGTTTGTTACCGGTAGTGGAGACGGCGGTGGTCG7480.1588289128075983No Hit
TAGTGCGCGTCTCAGGCCGGCCGACTTGTCGGACAAATTCCCTG7040.14948603558362195No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6720.1426912157843664No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG6670.1416295251907327No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5870.12464247569259387No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5610.11912168460569872No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5120.10871711678808868No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5020.10659373560082132No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4880.10362100193864701No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4790.1017099588701064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)