FastQCFastQC Report
Wed 31 May 2023
EGAF00007938262

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938262
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470947
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30240.6421104710296488No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21060.4471840780385054No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16240.34483710481221874No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15910.3378299468942365No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG15830.3361312419444226No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG13630.2894168558245408No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA13040.2768889068196634No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG12860.2730668206825821No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12330.26181290039006516No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11490.24397649841701932No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11110.23590764990540336No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG11100.23569531178667663No Hit
GCGACTACCGATCGCCAGCAGGTACCGCCAA9960.21148876625182877No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC8400.17836401973045798No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC8010.1700828331001153No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7940.16859646626902813No Hit
ATGGCAGCTCGTAAGAAAAAACGCGAACTGT7430.15776722221396464No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG7170.1522464311270695No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7020.1490613593461685No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6980.14821200687126151No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6190.1314372954918494No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5840.12400546133641366No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5480.11636128906225116No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5030.10680607371954806No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4970.10553204500718764No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT4840.10277164946374008No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4840.10277164946374008No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4780.10149762075137966No Hit
CCGGCAGTTGCGCCGACCAGCGCGGCTAGCC4770.10128528263265293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)