FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938264

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938264
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472865
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41180.8708616624195066No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39730.8401975193765663No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35790.7568756410391972No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22260.4707474649212778No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19300.408150317743965No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16620.3514745223266683No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14170.29966269442652765No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14150.29923974072938364No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13710.2899347593922155No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12790.27047888932359127No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12220.25842470895498715No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11110.23495077876349488No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9370.19815380711196642No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG9260.1958275617776744No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7910.16727818722045404No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7650.16177978915758198No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7460.15776172903471392No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6670.14105505799752574No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6450.13640256732894165No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA6370.13471075254036566No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5910.12498281750605353No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5470.1156778361688854No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5020.1061613779831453No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC4790.10129741046598924No Hit

[OK]Adapter Content

Adapter graph