FastQCFastQC Report
Sun 21 May 2023
EGAF00007938266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512552
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA62141.2123647942062463No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44020.8588396884608782No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32570.6354477204264153No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG29970.5847211599993757No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA29710.5796485039566717No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23800.46434313006290096No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT23270.4540027158220044No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18040.3519642885014594No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16920.3301128470867346No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15240.2973356849646475No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12650.24680422669309648No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12560.24504830729369897No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12540.24465810298272178No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11590.22612339821130342No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10790.21051522577221435No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10310.20115032230876087No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9890.19295603177823908No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9830.1917854188453074No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9630.18788337573553512No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8960.174811531317798No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8710.16993397743058264No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG7880.1537404985250277No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6920.1350106915981208No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6810.132864567887746No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6200.12096333640294059No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6160.12018292778098612No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5990.11686619113767968No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5630.10984251354008959No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5560.1084767984516693No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5470.10672087905227176No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5400.10535516396385147No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5160.10067271223212473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)