FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476238
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC31990.6717229620483876No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT25070.526417463537139No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23300.48925117273296126No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20160.4233177528882618No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG17980.37754232127633663No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16230.3407959885603417No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA14920.31328873378436833No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT14340.30110994922706713No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT13670.28704135327294333No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT13290.27906214959747017No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG12240.2570143499678732No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11530.24210583783738382No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC11360.23853619408783006No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11090.23286675989736225No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG11080.23265678085327085No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG10860.22803724188326008No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10470.2198480591636955No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10250.21522852019368469No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10110.21228881357640508No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT9010.1891911187263511No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT8700.18268176835951772No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8550.17953208269814672No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7710.16189384299446916No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7660.16084394777401215No Hit
TTCGTGCAGAGGATATGCCATGCCCTGGGCCGCCAGATGGATGG7180.15076495365762496No Hit
CGGTTCGCGCGGCTCACGTGGTACGCGCGGTTCACGCGGAACAC7170.15055497461353357No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6920.14530549851124858No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6880.144465582334883No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6300.1322867977775818No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5920.1243075941021086No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5760.12094792939664621No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5660.11884813895573221No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5550.11653836947072682No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5540.11632839042663543No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5170.10855916579525363No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG5060.10624939631024824No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC4970.10435958491342565No Hit
CGGGGTCAGGCGAGGCTGGGACAGCGGAGACAGAATGGTCGGCG4820.10120989925205466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)