FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938268

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938268
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476238
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47570.9988703127427883No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41200.8651136616565667No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC31840.6685732763870166No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA25280.5308270234630583No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19740.414498633036423No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG18140.38090198598179903No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT14750.3097190900348145No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC14180.29775028452160474No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC13220.2775922962888304No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12950.2719228620983626No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12700.2666733859960776No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12700.2666733859960776No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC12060.253234727174228No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11610.24378567019011504No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11320.23769627791146442No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11230.23580646651464185No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11180.23475657129418487No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10660.22383766100143204No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10220.2145985830614105No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10110.21228881357640508No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9990.20976906504730827No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8910.18709132828543712No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC8620.18100193600678652No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8310.17449258563995315No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8000.16798323527311973No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7780.16336369630310896No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG7330.15391463931899596No Hit
GCGCGCGGCTCCACCTACGGTACCCCGCGTC7160.15034499556944217No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7050.14803522608443676No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6880.144465582334883No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6250.13123690255712478No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6140.1289271330721194No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA6000.1259874264548398No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5770.12115790844073762No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5410.11359866285344722No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5340.11212880954480743No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5210.10939908197161922No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5180.10876914483934504No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5120.10750927057479663No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4990.10477954300160844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)