FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441370
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37860.85778371887532No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28120.6371071889797676No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18730.4243605138545891No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8630.195527561909509No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7240.16403471010716633No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6470.14658902961234338No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6300.14273738586673312No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5680.12869021455921337No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5580.12642454176767792No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5300.12008065795137866No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4460.1010490065024809No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)