FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938271

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938271
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449706
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18970.4218311519081356No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14350.31909736583456744No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12390.2755133353791143No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8520.18945711197982681No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6910.15365594410570463No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6450.14342703899881257No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5890.13097445886868309No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5020.11162848616651769No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4710.10473509359448174No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)