FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449706
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37530.8345452362209977No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30290.6735511645386096No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18860.41938510938257445No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8660.1925702570123592No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7020.15610198663126576No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7020.15610198663126576No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6210.1380902189430428No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5730.12741657883150326No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5570.1238586987943234No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5340.11874424624087737No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4600.10228905106892058No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)