FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007938276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424421
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35070.8263021858013623No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17510.41256205512922317No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15770.37156502623574234No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13510.318316011695934No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10990.25894100433296185No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9200.21676589989656497No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9020.21252482794206695No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8640.20357145381590447No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8240.19414684947257557No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6650.15668404720784315No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6630.1562128169906767No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6280.14796628819026392No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6260.14749505797309748No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5680.13382938167527053No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5350.1260540830920242No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4670.11003225570836504No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4460.10508433842811736No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4260.1003720362564529No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)