FastQCFastQC Report
Sun 21 May 2023
EGAF00007938278

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938278
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407038
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50821.2485320780860756No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33100.8131918887180067No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25450.6252487482741169No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG10450.2567327866194311No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9070.22282931814720003No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8610.21152816198978966No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8300.20391216544892615No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7020.17246547005439297No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6870.1687803104378461No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6420.15772483158820552No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG6400.15723347697266596No Hit
TACCAGGTTGGCATCGACGGCTCTAACCTGG6030.14814341658518368No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5600.1375792923510827No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5590.1373336150433129No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5380.13217439158014732No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5160.1267694908092119No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4970.1221016219615859No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4920.12087323542273694No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4640.1139942708051828No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4600.11301156157410364No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4530.11129182041971512No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4300.10564124234100994No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC4130.10146472810892349No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4080.10023634157007454No Hit

[OK]Adapter Content

Adapter graph