FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483066
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18060.3738619567512514No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14280.2956117797568034No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14010.2900224814000571No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13570.2809139951890632No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13390.2771877962845657No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13060.2703564316263202No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12320.2550376139078304No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12160.2517254371038326No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11090.22957525472709733No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9600.19873060823986785No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9370.193969354084121No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8750.18113466896862954No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8210.16995607225513698No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7910.16374574074764112No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7780.16105459709439288No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7270.15049703353164992No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6560.13579924896390969No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6430.13310810531066147No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6420.1329010942604116No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5320.11012987873292676No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5290.10950884558217718No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5170.10702471297917883No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5020.1039195472254309No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5000.10350552512493118No Hit
GCAGCAACCAAAACCACCCGCACCGCTGCTA4860.10060737042143308No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4850.10040035937118323No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)