FastQCFastQC Report
Sun 21 May 2023
EGAF00007938284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443352
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36790.8298146844944874No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13610.30697955574802865No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13040.2941229542214764No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8240.18585683610314152No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8130.18337573756292969No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7180.16194806835200926No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7130.1608202962882766No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6530.1472870315234847No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6160.13894151825186307No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5080.11458164167523774No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4930.11119832548403977No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4460.10059726808495281No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)