FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938285
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499984
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11160.22320714262856414No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9780.1956062594003008No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8740.17480559377900093No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7800.1560049921597491No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6870.13740439694070208No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6730.13460430733783482No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6180.12360395532657045No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6120.12240391692534161No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6050.12100387212390797No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5760.11520368651796857No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5230.10460334730711383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)