FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452990
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14740.3253934965451776No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14680.3240689639947902No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13680.3019934214883331No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11270.24879136404777147No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10960.24194794587076976No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9240.20397801275966357No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8570.18918739928033732No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8410.18565531247930417No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8220.18146095940307733No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6960.15364577584494138No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6730.14856840106845626No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6390.14106271661626085No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5950.13134947791341972No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5470.12075321751032031No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5170.11413055475838318No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5030.1110399788074792No Hit
CGGACCGGACGGCATGTCTTTGGCTGGTGCCTGTGCAGGCG4940.10905317998189806No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4770.10530033775580036No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)