FastQCFastQC Report
Wed 31 May 2023
EGAF00007938288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452990
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT29960.6613832534934546No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20160.44504293693017505No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15480.34172939799995583No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT14240.31435572529194905No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14230.3141349698668845No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC14130.31192741561623877No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11850.26159517870151655No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11450.25276496169893375No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9050.19978365968343673No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8740.19294024150643502No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8680.1916157089560476No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6200.13686836354003398No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5530.12207775006070774No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5380.11876641868473917No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5270.1163381090090289No Hit
GCGACCGGTCTGGCGTTCCGCACTCCGAACCCT4760.10507958233073578No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)