FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469777
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC9390.19988207170636282No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8660.18434278391662426No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8490.1807240456642194No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7540.16050168484195693No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG7320.155818611809433No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7250.1543285431172663No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5120.10898788148419357No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5070.10792354670407449No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG4830.10281473975950291No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)