FastQCFastQC Report
Wed 31 May 2023
EGAF00007938290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469777
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20790.44255040157351255No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT17410.3706013704374629No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG9070.1930703291136007No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8500.18093691262024322No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7830.1666748265666476No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA7480.15922448310581402No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7110.15134840573293287No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6590.14027932401969445No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT6300.1341061822950038No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC4720.10047320324324094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)