FastQCFastQC Report
Wed 31 May 2023
EGAF00007938293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489901
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA17020.34741713121630696No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG15860.32373887785491356No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14960.30536781921245315No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT13260.27066693066558345No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT12720.2596442954801072No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG12500.25515359225639467No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGG10650.21739086060244822No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10440.21310428025254083No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9630.19657032747432646No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT9350.1908548870077832No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCA9290.18963014976495252No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT8860.18085286619133253No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7550.1541127697228624No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7080.14451899465402193No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG6970.14227364304216567No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6780.13839530843986847No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC6710.13696644832323265No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA6550.1337004823423508No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6190.12635205888536663No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC5790.118187143933162No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5790.118187143933162No Hit
CACCAGCGGAACCAGGGACAGCTGCAGACGCGGAGGACCGG5520.11267582634042388No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT5490.11206345771900854No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG5310.10838924599051644No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5260.10736863162149088No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT5230.10675626300007553No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA4990.10185731402875275No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4980.10165319115494763No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)